In this study, the method of perturbation has been applied to obtain the dispersion relation (DR) of a two-stream free-electron laser (FEL) with a helical wiggler and an ion-channel with all relativistic effects on waves. This DR has been solved numerically to find the unstable modes and their growth rate. Numerical solutions of DR show that the growth rate is considerably enhanced in comparison with single-stream free-electron laser. In group II orbits, with relatively large wiggler induced velocities, new couplings are found. The effect of the velocity difference of the two electron beams on the instabilities has also been investigated in this study. Moreover, the effect of the ion-channel density on the maximum growth rate of FEL resonance has been analyzed.