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Title
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Computational insight into in silico analysis and molecular dynamics simulation of the dimer interface residues of ALS‑linked hSOD1 forms in apo/holo states: a combined experimental and bioinformatic perspective
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Type
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JournalPaper
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Keywords
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myotrophic lateral sclerosis · Human superoxide dismutase 1 · Dimer interface · Protein aggregation · Structural stability · Molecular dynamics simulations
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Abstract
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The aggregation of misfolded SOD1 proteins in neurodegenerative illnesses is a key pathological hallmark in amyotrophic lateral sclerosis (ALS). SOD1 is stabilized and enzymatically activated after binding to Cu/Zn and forming intramolecular disulfde. SOD1 aggregation/oligomerization is triggered by the dissociation of Cu and/or Zn ions. Therefore, we compared the possible efects of ALS-associated point mutations of the holo/apo forms of WT/I149T/V148G SOD1 variants located at the dimer interface to determine structural characterization using spectroscopic methods, computational approaches as well as molecular dynamics (MD) simulations. Predictive results of computational analysis of single-nucleotide polymorphisms (SNPs) suggested that mutant SOD1 has a deleterious efect on activity and structure destabilization. MD data analysis indicated that changes in fexibility, stability, hydrophobicity of the protein as well as increased intramolecular interactions of apo-SOD1 were more than holo-SOD1. Furthermore, a decrease in enzymatic activity in apo-SOD1 was observed compared to holo-SOD1. Comparative intrinsic and ANS fuorescence results of holo/apo-WT-hSOD1 and mutants indicated structural alterations in the local environment of tryptophan residue and hydrophobic patches, respectively. Experimental and MD data supported that substitution efect and metal defciency of mutants (apo forms) in the dimer interface may promote the tendency to protein mis-folding and aggregation, consequently disrupting the dimer–monomer equilibrium and increased propensity to dissociation dimer into SOD-monomer ultimately leading to loss of stability and function. Overall, data analysis of apo/holo SOD1 forms on protein structure and function using computational and experimental studies will contribute to a better understanding of ALS pathogenicity
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Researchers
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Mona Akhlaqi (Not In First Six Researchers), Saman Hosseinkhani (Fifth Researcher), Payam baziyar (Fourth Researcher), Haider Munzer (Third Researcher), Bagher Seyedalipour (Second Researcher), Hamza Dakhil Zaji (First Researcher)
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